BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformaticsgenome-analysisgenome-assemblyblendread-mappingde-novo-assemblyminimizersstrobemersseed-matchingfuzzy-seedsread-overlappingspaced-seeds
- Updated
May 10, 2023 - C