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Pull requests: nextstrain/ncov

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Pull requests list

feat: use nightly nextclade tree
#1170 opened Jan 28, 2025 by ivan-aksamentovLoading…
2 of 6 tasks
3
Add a map of Nextstrain clade to Pango lineage
#1159 opened Oct 23, 2024 by huddlejLoading…
4 tasks
3
Demo prefilter rule for Nextstrain GISAID build
#1128 opened Jul 25, 2024 by huddlejLoading…
4 tasks
8
inline root sequence
#1111 opened May 30, 2024 by rneherLoading…
Document example accepted docker image formats for action
#1105 opened May 3, 2024 by victorlinLoading…
1
@victorlin
Include profile for open 21L builds
#1101 opened Mar 9, 2024 by trvrbLoading…
1 task done
1
Update Suffolk lat/long
#1100 opened Feb 27, 2024 by joverlee521Loading…
Introduce minimum augur version check
#1070 opened May 16, 2023 by jameshadfieldLoading…
3
Allow specification of container image in workflow rebuild-100k.yml
#1067 opened May 5, 2023 by corneliusroemerLoading…
2
Soft-mask (just for topology) 486P site 23018
#1060 opened Apr 11, 2023 by corneliusroemerLoading…
4 tasks
2
Allow a list of sequence exclusion files, instead of just one
#977 opened Jul 11, 2022 by sacundimLoading…
1
Memory resource definitions
#953 opened May 25, 2022 by tsibleyLoading…
3 tasks
1
2
Fix annotate metadata with numeric strains
#952 opened May 25, 2022 by huddlejLoading…
2 tasks done
1
@huddlej
6
Remove whitespace indents from large Auspice JSONs
#944 opened May 9, 2022 by fanninpmLoading…
4 tasks
4
Fill in more lat/long data from the OpenStreetMap name-to-location API
#920 opened Apr 15, 2022 by jgadlingLoading…
2
Add parameter to enable overriding tree args
#871 opened Feb 16, 2022 by huddlejLoading…
4 of 5 tasks
4
Remove redundant include strains bug Something isn't working
#843 opened Jan 25, 2022 by huddlejLoading…
2 tasks done
@huddlej
2
#657 Validate input files from config file
#821 opened Dec 15, 2021 by emontag47Loading…
4 tasks
add submitters to footer filters;
#738 opened Sep 28, 2021 by eharkinsLoading…
7
Implement subsampling via a script
#711 opened Aug 23, 2021 by jameshadfieldLoading…
1 task
@huddlej@jameshadfield
Refactoring and Optimization
#678 opened Jul 2, 2021 by abnsyLoading…
Report Augur versions on error without --use-conda
#611 opened Apr 19, 2021 by huddlejLoading…
1 task
1
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