Skip to content
Navigation Menu
Toggle navigation
Sign in
Product
GitHub Copilot
Write better code with AI
GitHub Advanced Security
Find and fix vulnerabilities
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Discussions
Collaborate outside of code
Code Search
Find more, search less
Explore
Why GitHub
All features
Documentation
GitHub Skills
Blog
Solutions
By company size
Enterprises
Small and medium teams
Startups
Nonprofits
By use case
DevSecOps
DevOps
CI/CD
View all use cases
By industry
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
Topics
AI
DevOps
Security
Software Development
View all
Explore
Learning Pathways
Events & Webinars
Ebooks & Whitepapers
Customer Stories
Partners
Executive Insights
Open Source
GitHub Sponsors
Fund open source developers
The ReadME Project
GitHub community articles
Repositories
Topics
Trending
Collections
Enterprise
Enterprise platform
AI-powered developer platform
Available add-ons
GitHub Advanced Security
Enterprise-grade security features
Copilot for business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search or jump to...
Search code, repositories, users, issues, pull requests...
Search syntax tips
Provide feedback
Saved searches
Use saved searches to filter your results more quickly
Sign in
Sign up
Reseting focus
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
nextstrain
/
ncov
Public
Notifications
You must be signed in to change notification settings
Fork
406
Star
1.4k
Code
Issues
72
Pull requests
22
Actions
Security
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Security
Insights
Commits
Branch selector
master
User selector
All users
Datepicker
All time
Commit History
Commits on Apr 23, 2025
Designate Pango NB.1.8.1 as clade 25B (#1175)
corneliusroemer
authored
5555ece
Copy full SHA for 5555ece
Commits on Mar 24, 2025
Update exclude
trvrb
committed
14fbd72
Copy full SHA for 14fbd72
Commits on Mar 14, 2025
Update exclude
trvrb
committed
dfd75da
Copy full SHA for dfd75da
Commits on Mar 5, 2025
Update exclude
trvrb
committed
416b714
Copy full SHA for 416b714
Commits on Feb 27, 2025
Update exclude
trvrb
committed
2100ca3
Copy full SHA for 2100ca3
Update exclude
trvrb
committed
c20471a
Copy full SHA for c20471a
Commits on Feb 26, 2025
Merge pull request #1174 from nextstrain/catch-slack-errors
Show description for 7464941
joverlee521
authored
7464941
Copy full SHA for 7464941
export_for_nextstrain.smk: include full traceback for Slack error
Show description for bf64d62
joverlee521
and
tsibley
committed
bf64d62
Copy full SHA for bf64d62
export_for_nextstrain.smk: catch Slack errors
Show description for 1b061ed
joverlee521
committed
1b061ed
Copy full SHA for 1b061ed
export_for_nextstrain.smk: Convert to LF
joverlee521
committed
1d37f03
Copy full SHA for 1d37f03
Commits on Feb 10, 2025
Merge pull request #1172: Update color config entries on workflow config file reference page
victorlin
authored
bc5100b
Copy full SHA for bc5100b
Update changelog
victorlin
committed
04b76ef
Copy full SHA for 04b76ef
Commits on Feb 7, 2025
Add entry for files.colors
Show description for 54ad5e3
victorlin
committed
54ad5e3
Copy full SHA for 54ad5e3
Add file format details to builds.*.colors
victorlin
committed
19c21ed
Copy full SHA for 19c21ed
Commits on Jan 29, 2025
Update changelog
trvrb
committed
56ee783
Copy full SHA for 56ee783
Merge pull request #1169 from nextstrain/mlr-lineage-fitness
Show description for b97d749
trvrb
authored
b97d749
Copy full SHA for b97d749
Merge pull request #1171 from nextstrain/lineage-colors
Show description for d2b174e
trvrb
authored
d2b174e
Copy full SHA for d2b174e
Update lineage colors
Show description for e94143c
trvrb
committed
e94143c
Copy full SHA for e94143c
Commits on Jan 28, 2025
MLR lineage fitness: Save missing values as null rather than NaN
Show description for f088d49
trvrb
committed
f088d49
Copy full SHA for f088d49
Commits on Jan 27, 2025
Refactor fetch_mlr_lineage_fitness script
Show description for 904fdde
trvrb
committed
904fdde
Copy full SHA for 904fdde
Commits on Jan 24, 2025
Merge pull request #1167 from nextstrain/clades-2024-12
Show description for 8beaf39
trvrb
authored
8beaf39
Copy full SHA for 8beaf39
Update name of LP.8.1 to clade 25A
trvrb
committed
c6a88b6
Copy full SHA for c6a88b6
Update error message output
trvrb
committed
6f5d767
Copy full SHA for 6f5d767
Move unused workflow logic to deprecated scripts
trvrb
committed
7bd4daa
Copy full SHA for 7bd4daa
Commits on Jan 23, 2025
Update exclude
trvrb
committed
c28f10a
Copy full SHA for c28f10a
Deprecate `logistic_growth` coloring and remove it from the workflow
Show description for 3b5e2d0
trvrb
committed
3b5e2d0
Copy full SHA for 3b5e2d0
Deprecate "mutational_fitness" coloring and remove from the workflow
Show description for 15bbd82
trvrb
committed
15bbd82
Copy full SHA for 15bbd82
Update change log
trvrb
committed
ce167ce
Copy full SHA for ce167ce
Improve documentation of the MLR lineage fitness analysis
Show description for 30dc8a8
trvrb
committed
30dc8a8
Copy full SHA for 30dc8a8
Include MLR lineage fitness
Show description for 340b925
trvrb
committed
340b925
Copy full SHA for 340b925
Commits on Dec 20, 2024
Revert "Use weighted sampling for recent samples in global builds" (#1168) due to unexpected 3x reduction in recent sample size
corneliusroemer
authored
20f5fc3
Copy full SHA for 20f5fc3
Designate LP.8.1 as clade 24J
corneliusroemer
committed
ca0478e
Copy full SHA for ca0478e
Commits on Dec 18, 2024
Merge pull request #1166 from nextstrain/rtd-config
Show description for 47cb034
joverlee521
authored
47cb034
Copy full SHA for 47cb034
readthedocs.yml: explicit Sphinx configuration
Show description for 0804520
joverlee521
committed
0804520
Copy full SHA for 0804520
Commits on Dec 17, 2024
Merge pull request #1161: Use weighted sampling for recent samples in global builds
victorlin
authored
2f32f78
Copy full SHA for 2f32f78
Pagination
Previous
Next
You can’t perform that action at this time.
