261 captures

05 Dec 2006 - 11 Apr 2025

Nov	DEC	Jun
	04
2006	2007	2008

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Collection: 51_crawl

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TIMESTAMPS

Sony PS3 Cluster (IBM Cell BE) ⇔ 8+1 nodes, ppc64 FC5 w/ CellSDK Official Annoucement of PS3 Cluster

Hardware 8+1 nodes IBM CellBE one 2-way SMT PowerPC core (PPE), 3.2GHz, 32kB L1-I cache, 32kB L1-D cache, 512kB locking L2 cache, 256MB XDR DRAM six SPEs (seventh is used by Sony virtualization software, eigth is hardware disabled in Sony PS3 version of CellBE), each at 3.2GHz w/ VMX vector unit, 128 SIMD GPRs, 256kB SRAM 218 GFLOPS of total floating point performance (for 8 SPEs, that is) 25.6GB/sec memory bandwidth (per interface to SPEs and XDR RAM) Gigabit Ethernet 20/60/120GB harddrive full specs operational since January 3, 2007

Software All software is 64 bit unless marked otherwise. Fedora Core 5 Linux ppc64 MPICH2 (also MPI API) locally: man MPI OpenMP v2.5 (via gcc) gcc (C compiler) CellSDK 1.1

Access Request a user id from Frank Mueller (server "optout" for cluster, server "opt" for research workstation). Please indicate your unity ID and student ID. Accounts on opt use your unity ID but do not share any unity file space. Install ~/.ssh/config on your local Linux machine. If you're not using Linux, skip this step. On Linux, ssh into any psXX machine (XX=00..07). ssh <your-username›@psXX Your initial password is your student ID. On windows, use your favorite ssh client to log in to optout.csc.ncsu.edu, port 22XX (XX=00..07). There may be a way to create aliases as well, check the manual of you ssh client. For research workstation (only upon special request), use: ssh <your-username›@ps3.csc.ncsu.edu Please change your password. yppasswd The new password will be effective immediately.

Using OpenMP

• The "#pragma omp" directive in C programs works.

   gcc -fopenmp -o fn fn.c 

  Gcc 4.1 for FC5 is back-patched with the 4.2 OpenMP support. It may not be the fastest but it works.

Interactively running MPI programs

• Create the file ~/.rhosts and set the access rights:

   chmod 600 .rhosts 

• Create a file ~/.mpd.conf and set the access rights:

   chmod 600 .mpd.conf 

• Append to your file ~/.bashrc:

   export PATH=".:~/bin:/usr/local/bin:/usr/bin:$PATH" export MANPATH="/usr/local/man:/usr/share/man" 

  Log out and back in to optXX to activate the new settings.
• Check if MPD is running:

   mpdtrace 

  This should return a list of available nodes to run MPI jobs on. If not, see below: user-level MPD
• Compile MPI programs:

   mpicc -O3 -o pi pi.c 

  If you're using BLAS/ATLAS:

   mpicc -O3 -o pi pi.c -L/usr/lib64/atlas -lcblas -latlas 

• Execute the program on 2 processors (using MPICH2):

   mpirun -np 2 pi 

  Try again with a different number of processors.
• Use the new MPICH2 run/execute interface (more options, see man page):

   mpiexec -n 2 pi 

  Try again with a different number of processors.

User-level MPD

• Figure out which nodes are alive: ping optXX for XX=00..15. Still, they may not work properly. Try: rsh optXX pwd -- maybe working?
• Create a file like ~/mpd.hosts but only include the nodes that are working!
• Edit your ~/.mpd.conf file to remove/comment out the line

   MPD_USE_ROOT_MPD=1 

• If you have 2 working nodes and you are logged in to optYY, issue:

   mpdboot --ifhn=optmpiYY -n 2 -r rsh --ncpus=2 

  You can now run MPI jobs.
• Inquire about running jobs:

   mpdlistjobs 

• Stop MPD daemons:

   mpdallexit 

• Clean up MPD daemons and files:

   mpdcleanup 

• Vary you mpdboot parameters. In the above case, you'll run 2 jobs per node (since we have 2-way SMTs, i.e., 2 logical processors per node). Check out the man pages.

Known Problems

• Ganglia has not been installed yet
• ATLAS has not been installed yet
• PAPI has not been installed yet

More Information on the PS3

• Articles from CellBE Issue, IBM JR&D;, 2007
• README.fedora7 covering installation and programming for F7+SDK 3.0
• all SDK 3.0 docs
• Cell programming by Terra Soft / Yellowdog
• older docs:
  • README covering installation and programming for FC5+SDK 1.0
  • Cell programming tutorial (V1.1)
  • Cell programming tutorial (V2.0)
  • Cell SKD Guide
  • C++ Language_Extensions for Cell V2.2.1
  • SPE Library Calls (V1)
  • SPE Library Calls (V2)
  • SPE Library Calls (V2.2)
  • SPU Language Extensions (V2.1) by Sony (local copy)
  • Libraries SDK
  • IDL for RPCs to SPEs
• Cell talks by IBM and others
• Cell course by IBM (local copy of slides)
• Cell workshop Cupertino 2006 (local copy of slides)
• Linux on Cell (Barcelona), incl. Cell SDK and kernel releases (but not PS3 specific)
• Sony PS3 Linux docs
• Maximizing the power of the Cell Broadband Engine processor -- 25 tips to optimal application performance

References:

• A User's Guide to MPI by Peter Pacheco
• Debugging: Gdb does not work with MPI, and we don't have totalview (an MPI-aware debugger). Hence, you are down to good old printf debugging, unfortunately.
• Linux Cluster Info (add cluster tools to the wish list)

Additional references:

• Intro to UNIX at NCSU
• Emacs reference card
• Gdb reference card
• Gnu manuals (make, gdb and many more)