This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…