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Maria Doyle
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25 days ago • updated 20 days ago
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GSEA in R/Bioconductor course
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8 weeks ago
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9 weeks ago
Maria Doyle
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3
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updated 16 days ago by
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• 0 • written 2.2 years ago by
Maria Doyle
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Gene Set Enrichment Analysis in Bioconductor course
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9 weeks ago • updated 8 weeks ago
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10 weeks ago
Maria Doyle
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Mass Spectrometry and Proteomics with R/Bioconductor course
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Maria Doyle
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Maria Doyle
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Maria Doyle
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5 months ago
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6 months ago
Maria Doyle
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14 months ago • updated 6 months ago
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6 months ago
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Maria Doyle
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7 months ago
Maria Doyle
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updated 24 days ago by
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• 0 • written 7 months ago by
Maria Doyle
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8 months ago
Maria Doyle
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8 months ago
Maria Doyle
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363
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8 months ago
shepherl
4.1k
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9 months ago
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News:
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9 months ago
Maria Doyle
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9 months ago
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11 months ago
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News:
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News:
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13 months ago • updated 11 months ago
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12 months ago
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Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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