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Official NCBI EDirect docker image

Entrez Direct command line applications in a Docker image.

Example usage

Fetch a nucleotide sequence in FASTA format

docker run --rm -it ncbi/edirect efetch -db nucleotide -id u00001 -format fasta docker run --rm -it ncbi/edirect /bin/sh -c " esearch -db nucleotide -query u00001 | efetch -format fasta"

Check installation

docker run --rm -it ncbi/edirect installconfirm

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